WordCloud statistics

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Citations per year

Number of citations per year for the bioinformatics software tool WordCloud
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Tool usage distribution map

This map represents all the scientific publications referring to WordCloud per scientific context
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Associated diseases

This word cloud represents WordCloud usage per disease context
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Protocols

WordCloud specifications

Information


Unique identifier OMICS_28990
Name WordCloud
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 3.1.1
Stability Stable
Requirements
Cytoscape
Maintained Yes

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  • person_outline Layla Oesper

Publication for WordCloud

WordCloud citations

 (3)
library_books

Integration of VDR genome wide binding and GWAS genetic variation data reveals co occurrence of VDR and NF κB binding that is linked to immune phenotypes

2017
BMC Genomics
PMCID: 5294817
PMID: 28166722
DOI: 10.1186/s12864-017-3481-4

[…] To illustrate the frequency, we have adopted a similar approach to motif analyses in which the size of the nucleotide letter is proportional to significance. In the current study we have exploited a wordcloud approach to visualize the level of significance of the transcription factors. Reflecting the active levels of transcription from these regions the RNA polymerase POLR2A is very commonly repr […]

call_split

GRK6 regulates ROS response and maintains hematopoietic stem cell self renewal

2016
PMCID: 5260904
PMID: 27882944
DOI: 10.1038/cddis.2016.377
call_split See protocol

[…] as a node and edges represented gene overlap between sets. Automated network layout groups related gene sets into network clusters, indicated by grey shadows. Terms in each cluster were summarized by WordCloud. […]

call_split

CD11b+Ly6C++Ly6G Cells with Suppressive Activity Towards T Cells Accumulate in Lungs of Influenza a Virus Infected Mice

2015
PMCID: 4681352
PMID: 26716013
DOI: 10.1556/1886.2015.00038
call_split See protocol

[…] ent.be/cbd/papers/BiNGO) [, ], which is implemented as a plugin for Cytoscape. For GOEA visualization, we used the Cytoscape plugins Enrichment Map (http://baderlab.org/Software/EnrichmentMap) [] and WordCloud (http://baderlab.org/Software/WordCloud-Plugin) []. […]


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WordCloud institution(s)
Department of Computer Science, Brown University, Providence, RI, USA; The Donnelly Centre, University of Toronto, Toronto, ON, Canada; Banting and Best Department of Medical Research, University of Toronto, Toronto, ON, Canada
WordCloud funding source(s)
Supported by the Google Summer of Code program and by a grant from the US NIH via National Human Genome Research Institute (NHGRI) grant P41 P41HG04118.

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