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Bioinformatics workflows | Phylogenomics

phyx
Desktop

phyx

Performs phylogenetics analyses on trees and sequences. phyx provides a…

Performs phylogenetics analyses on trees and sequences. phyx provides a collection of programs written in C ++ to explore, manipulate, analyze and simulate phylogenetic objects (alignments, trees…

Phylemon
Web

Phylemon

Allows users to analyze molecular sequences. The Phylemon interface can be used…

Allows users to analyze molecular sequences. The Phylemon interface can be used by experts and non-expert users. It contains several types of features: (1) it allows users to design and save…

ReproPhylo
Desktop

ReproPhylo

A Python package designed to deliver reproducible phylogenomic analyses.…

A Python package designed to deliver reproducible phylogenomic analyses. ReproPhylo promotes reproducibility on two levels. First, it eases the complex phylogenomic pipeline design process by…

Arb Tree…
Desktop

Arb Tree Generation

A software package to leverage the utility of the interactive exploratory tools…

A software package to leverage the utility of the interactive exploratory tools offered by ARB with the computational throughput of cloud-based resources. Arb Tree Generation pipeline serves as…

phyloGenerator
Desktop

phyloGenerator

An easy way for ecologists to make realistic, tenable phylogenies. With…

An easy way for ecologists to make realistic, tenable phylogenies. With phyloGenerator, you can download real DNA sequence data for your species of interest, and then generate a calibrated phylogeny…

augur
Desktop

augur

Tracks evolution from sequence and serological data. Augur is an informatic…

Tracks evolution from sequence and serological data. Augur is an informatic processing pipeline that aims to subsamples, cleans, aligns sequences and build a phylogenetic tree from this data. The…

Agalma
Desktop

Agalma

Allows construction of matrices for phylogenomic analyses. Agalma is an…

Allows construction of matrices for phylogenomic analyses. Agalma is an automated phylogenomics workflow that conducts complete phylogenomic analyses, from raw sequence reads to preliminary…

Hal
Desktop

Hal

Produces multiple alignments and trees from genomic data. Hal is a phylogenetic…

Produces multiple alignments and trees from genomic data. Hal is a phylogenetic pipeline. The alignments can be produced by a choice of four alignment programs and analyzed by a variety of…

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