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X-Cyt specifications


Unique identifier OMICS_05643
Name X-Cyt
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for X-Cyt

X-Cyt citations


Finding the positive feedback loops underlying multi stationarity

BMC Syst Biol
PMCID: 4451965
PMID: 26013004
DOI: 10.1186/s12918-015-0164-0

[…] ere αij,βij are nonnegative integers, called the stoichiometric coefficients of the reactants and the products, respectively. as a running example we use the network in figure . it has three species, x cyt, x nuc, x\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} […]


Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells

PLoS Genet
PMCID: 4072514
PMID: 24968232
DOI: 10.1371/journal.pgen.1004404

[…] to avoid biases potentially induced by cdna preparation. out of the 215 genes assayed, 115 were within densely genotyped disease risk loci (see and ). we quantified cd4+ tem cell abundance with x-cyt, an automated statistical method that accurately identifies cell populations in cytometry data ., we first aimed to identify snp variants that regulated expression of genes in cis. to best […]

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X-Cyt institution(s)
Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA

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