X! Tandem pipeline

X! Tandem specifications


Unique identifier OMICS_02400
Name X! Tandem
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License Artistic License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for X! Tandem

X! Tandem citations

PMCID: 3517583

[…] were also made against the swissprot database to detect contamination. mascot searches were further validated using scaffold (version scaffold_3_00_06, proteome software inc). using scaffold x! tandem searches were performed on a subset of the custom database using the same parameters as used for mascot searches. peptide identifications were accepted if they could be established […]

PMCID: 3328285

[…] (proteome software, portland, oregon, usa) was used to validate protein identifications derived from ms/ms sequencing results. scaffold verifies peptide identifications assigned by mascot using the x! tandem database search program. scaffold then probabilistically validates these peptide identifications using peptideprophet and derives corresponding protein probabilities using proteinprophet. […]

PMCID: 3205851

[…] separate projects, stored in prose (35), and deposited in pride (36) (accession numbers 13401–13512). the proteios platform was used for performing automated database searches in both mascot and x! tandem against the human ipi protein database (version 3.60 and against a random generated decoy ipi version 3.60 with same amino acid distribution) for the colon samples and the saccharomyces […]

X! Tandem institution(s)
Manitoba Centre for Proteomics, University of Manitoba, Winnipeg, MB, Canada

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