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XANNpred specifications

Information


Unique identifier OMICS_11905
Name XANNpred
Interface Web user interface
Restrictions to use None
Input data Up to 5 protein sequences
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ian M. Overton

Publication for XANNpred

XANNpred citations

 (3)
library_books

Protein stability: a crystallographer’s perspective

2016
PMCID: 4741188
PMID: 26841758
DOI: 10.1107/S2053230X15024619

[…] et al., 2014), XtalPred (Jahandideh et al., 2014; Slabinski et al., 2007), POODLE (Shimizu, 2014), MFDp2 (Mizianty et al., 2014), MoRFpred (Disfani et al., 2012), RFCRYS (Jahandideh & Mahdavi, 2012), XANNpred (Overton et al., 2011), SVMCRYS (Kandaswamy et al., 2010), SCMCRYS (Charoenkwan et al., 2013), CRYSTALP2 (Kurgan et al., 2009), MetaPPCP (Mizianty & Kurgan, 2009) and ParCrys (Overton et al., […]

call_split

Computational approaches to selecting and optimising targets for structural biology

2011
PMCID: 3202631
PMID: 21906678
DOI: 10.1016/j.ymeth.2011.08.014
call_split See protocol

[…] or experimental work. As noted above, successful progression of a selected target through to the stage of diffraction-quality crystals is a critical consideration. Algorithms to estimate this include XANNpred, OB-Score, ParCrys, XtalPred, PPCpred and PDPredictor . Approaches focused on key stages of the structural biology pipeline have also been developed, including predictors of soluble expressio […]

call_split

The Scottish Structural Proteomics Facility: targets, methods and outputs

2010
J Struct Funct Genomics
PMCID: 2883930
PMID: 20419351
DOI: 10.1007/s10969-010-9090-y
call_split See protocol

[…] opensity prediction were also developed. The OB-Score [] combines hydrophobicity and predicted pI within a statistical framework, the ParCrys algorithm combines more features of the sequence [] while XANNpred (manuscript submitted) is a machine-learning technique that includes a broad range of properties including predicted secondary structure. TarO presents results sorted by ParCrys and the OB-Sc […]


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XANNpred institution(s)
School of Life Sciences Research, University of Dundee, Dow Street, Dundee, UK; Department of Computing Science, University of Glasgow, Glasgow, UK
XANNpred funding source(s)
UK Biotechnology and Biological Sciences Research Council (BBSRC) Structural Proteomics of Rational Targets initiative, Grant Number: BBS/B/14434; Wellcome Trust, Grant Number: WT083481 Royal Society of Edinburgh Scottish Government Fellowship co-funded by Marie Curie Actions

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