XCMS pipeline

XCMS specifications

Information


Unique identifier OMICS_06038
Name XCMS
Alternative names centWave, XCMS Online
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Subtool


  • Massifquant

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Information


Unique identifier OMICS_06038
Name XCMS
Alternative names centWave, XCMS Online
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • Massifquant

Publications for XCMS

XCMS citation

2017
PMCID: 5665457

[…] fisher scientific, bremen, germany). deconvolution was performed using the freely available xcms software as described previously (dunn et al., 2011b; smith et al., 2006b). data were exported from xcms as a .csv file for further data analysis. the quality of data was assessed by applying qc data as previously described (smith et al., 2006b), with all metabolite features with an rsd >20% […]

XCMS institution(s)
Leibniz Institute of Plant Biochemistry, Department of Stress and Developmental Biology, Halle, Germany

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