XenofilteR specifications

Information


Unique identifier OMICS_32260
Name XenofilteR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some reads aligned to the human reference and reads aligned to the mouse reference genome.
Input format BAM
Output data A file, which contains the sequence reads classified as human only and optionally the file with all reads classified as mouse.
Output format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.5
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Daniel Peeper <>
  • person_outline Oscar Krijgsman <>

Publication for XenofilteR

XenofilteR institution(s)
Central Genomic Facility, Netherlands Cancer Institute, Amsterdam, The Netherlands; Division of Molecular Oncology and Immunology, Netherlands Cancer Institute, Amsterdam, The Netherlands; Division of Molecular Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands; Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, The Netherlands; Experimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK; The Wellcome Trust/Cancer Research UK (CRUK) Gurdon Institute, University of Cambridge, Cambridge, UK; Division of Experimental Animal Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands; Cancer Genome Project, The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
XenofilteR funding source(s)
Supported by the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007–2013) / ERC synergy grant agreement n° 319661 COMBATCANCER, the Dutch Cancer Society (NKI-2013-5799; KK, DSP), Cancer Research UK and The Wellcome Trust (WT098051, DJA) and a Queen Wilhelmina Award by the Dutch Cancer Society (DSP).

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