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xenoGI specifications

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Unique identifier OMICS_22334
Name xenoGI
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of sequenced genomes.
Input format GenBank
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for xenoGI

xenoGI citation

library_books

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

2018
BMC Bioinformatics
PMCID: 5799925
PMID: 29402213
DOI: 10.1186/s12859-018-2038-0

[…] We look at two examples of genomic islands from the enteric bacteria with the goal of demonstrating the sort of analysis one can do with xenoGI. We do this on a tree of eleven enteric species (Fig. ). Fig. 3The first example is Salmonella pathogenicity island 2 (SPI-2), from Salmonella enterica [, ]. This island is essential for virule […]


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xenoGI institution(s)
Department of Biology, Harvey Mudd College, Claremont, CA, USA
xenoGI funding source(s)
Supported by HHMI Undergraduate Science Education award number 52007544 to Harvey Mudd College.

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