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xenoGI | Reconstructing the history of genomic island insertions in clades of closely related bacteria

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Identifies and maps genomic islands. xenoGI contains several features: it groups genes by origin, identifies islands of genes that entered via common horizontal transfer events, and maps those events onto the phylogenetic tree. It includes optional scripts to help users to obtain multiple alignments. In addition, this tool is capable of reconstructing genomic islets and uses synthetic information.

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xenoGI forum

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xenoGI classification

xenoGI specifications

Unique identifier:
OMICS_22334
Interface:
Command line interface
Input data:
A set of sequenced genomes.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
GenBank
Programming languages:
Python, Shell (Bash)
Stability:
Stable

xenoGI distribution

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xenoGI support

Maintainer

  • Eliot Bush <>

Credits

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Publications

Institution(s)

Department of Biology, Harvey Mudd College, Claremont, CA, USA

Funding source(s)

Supported by HHMI Undergraduate Science Education award number 52007544 to Harvey Mudd College.

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