xiFDR specifications


Unique identifier OMICS_21714
Name xiFDR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An mzIdentML file or a table of PSMs.
Output data An amended mzIdentML file or a set of tables containing PSMs, peptide pairs, residue pairs, and protein pairs that pass the requested FDR thresholds.
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Version 1.0.10
Stability Stable
Source code URL https://codeload.github.com/lutzfischer/xiFDR/tar.gz/v1.0.10
Maintained Yes



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  • person_outline Juri Rappsilber <>

Additional information


Publication for xiFDR

xiFDR institution(s)
Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK; Chair of Bioanalytics, Institute of Biotechnology, Technische Universitat Berlin, Berlin, Germany
xiFDR funding source(s)
Supported by The Wellcome Trust through a Senior Research Fellowship (103139), a Centre Core Grant (092076), and an Instrument Grant (108504).

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