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XMotifs specifications

Information


Unique identifier OMICS_03486
Name XMotifs
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Requirements
biclust, fabia, isa
Maintained No

Versioning


No version available

Publication for XMotifs

XMotifs citations

 (2)
library_books

A proteome view of structural, functional, and taxonomic characteristics of major protein domain clusters

2017
Sci Rep
PMCID: 5660162
PMID: 29079755
DOI: 10.1038/s41598-017-13297-0

[…] tends to find sub-matrices having all ones (“1”), resulting in 10 clusters each with few PDs that are present in all species of the cluster (size too small to be visible on the plot of Fig. ), while Xmotifs tends to identify sub-matrices whose rows have the same state (i.e. either “1” or “0”) over a set of columns, yielding five groups in which protein domains are “absent” in the group’s species. […]

library_books

Network aided Bi Clustering for discovering cancer subtypes

2017
Sci Rep
PMCID: 5430742
PMID: 28432308
DOI: 10.1038/s41598-017-01064-0

[…] s by maximizing mutual information between entries of bi-clusters. But this approach is restricted to non-negative data matrix. Murali et al. proposed the concept of conserved gene expression motifs (xMOTIFs), each motif is defined as a subset of genes whose expressions are simultaneously conserved for a subset of samples. xMOTIFS aims to discover large conserved gene motifs that cover all the sam […]


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XMotifs institution(s)
Bioinformatics Program, Boston University, Boston, MA, USA

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