xMSanalyzer protocols

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description
xMSanalyzer computational protocol

xMSanalyzer specifications

Information


Unique identifier OMICS_06039
Name xMSanalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for xMSanalyzer

xMSanalyzer IN pipelines

 (2)
2018
PMCID: 5863097
PMID: 29425024
DOI: 10.1021/acs.analchem.7b04073

[…] chromatography (ultimate 3000, dionex, sunnyvale, ca) and fourier transform mass spectrometry (q-exactive, thermo scientific, waltham, ma). data was extracted using aplcms64 with modifications by xmsanalyzer.65 see si for details. the metabolomics data set is available upon request to the corresponding authors., statistical analysis, network/pathway analysis, and metabolite set enrichment […]

2014
PMCID: 4302260
PMID: 25468946
DOI: 10.2337/dc14-2033

[…] metabolomics data analysis. feature and sample quality assessment was performed based on coefficient of variation (cv) and pearson correlation, respectively, based on the technical replicates using xmsanalyzer (24). metabolites with cv >50% in our samples were excluded from further analyses. potential metabolite identities were determined by performing an online search (10 ppm mass accuracy) […]

xMSanalyzer institution(s)
BimCore, School of Medicine, Emory University, Atlanta, GA, USA

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