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XPRESS specifications

Information


Unique identifier OMICS_02488
Name XPRESS
Alternative name TPP distribution
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Ruedi Aebersold

Publication for XPRESS

XPRESS citations

 (28)
library_books

Chemical speciation and fate of tripolyphosphate after application to a calcareous soil

2018
Geochem Trans
PMCID: 5758486
PMID: 29313216
DOI: 10.1186/s12932-017-0046-z

[…] rm laboratory results, we hypothesized that TPP adsorption will affect both TPP mobility and chemical fate in soils. The application of TPP to a P-limited field site will help determine the extent of TPP distribution/filtration and provide an indication of how long TPP can remain adsorbed in a natural system without hydrolysis and precipitation reactions occurring. Phosphorus XANES and LC model fi […]

call_split

Proteomic analysis of lung metastases in a murine breast cancer model reveals divergent influence of CTSB and CTSL overexpression

2017
PMCID: 5706009
PMID: 29187882
DOI: 10.7150/jca.21401
call_split See protocol

[…] at protein ID level. Proteins with only one identified peptide were only accepted when measured in all three replicates of one genotype. The relative quantitation was performed on MS1 level using the XPRESS algorithm . Protein fold change (FC) values were calculated as log2 (abundance tgCTS / abundance WT). The FC values were normalized to center at zero. Statistical significance was tested using […]

library_books

Mapping the Interactome of a Major Mammalian Endoplasmic Reticulum Heat Shock Protein 90

2017
PLoS One
PMCID: 5215799
PMID: 28056051
DOI: 10.1371/journal.pone.0169260

[…] modification of +16 allowed for methionine; static modification set to +227.13 for ICAT-labeled cysteine and +9 for heavy ICAT-labeled cysteine residues, with a maximum of 4 modified AAs per peptide. XPRESS was used to quantify ICAT peptides []. Briefly, XPRESS isolates light and heavy peptide elution profiles, determines the area of each peak and calculates the abundance ratio based on the areas. […]

library_books

Lineage diversification, homo and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses

2016
Sci Rep
PMCID: 5103266
PMID: 27830770
DOI: 10.1038/srep36960

[…] tion of complementary DNA (cDNA). A cDNA library was prepared using the NEBNext Fast DNA Fragmentation & Library Prep Set for Ion Torrent (New England Biolabs, Beverly, MA, USA) using the Ion Torrent Xpress Barcode Adapters (Thermo Fisher Scientific, Waltham, MA, USA). The emulsion PCR and subsequent templated bead enrichment was performed with a OneTouch v2 instrument and Ion OneTouch ES (Thermo […]

library_books

Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast mediated responses

2016
BMC Cancer
PMCID: 4782372
PMID: 26951071
DOI: 10.1186/s12885-016-2193-5

[…] ine carbamidomethylation (+57.02 Da), as well as lysine and N-terminal dimethylation (12COH2 formaldehyde, +28.03 Da; 13COD2 formaldehyde, +34.06 Da). For relative peptide and protein quantification, XPRESS [] was used. Mass tolerance for quantification was ± 0.015 Da (for Orbitrap XL), or ± 20 ppm (for Q-Exactive Plus). Ratios of each dataset were calculated as treated cells over control. The mas […]

call_split

A Single Glycan at the 99 Loop of Human Kallikrein related Peptidase 2 Regulates Activation and Enzymatic Activity*

2015
PMCID: 4705380
PMID: 26582203
DOI: 10.1074/jbc.M115.691097
call_split See protocol

[…] aldehyde, 32.06 Da; heavy formaldehyde, 36.08 Da). X! Tandem results were further validated by PeptideProphet () at a confidence level of >95%. Peak areas for relative quantitation were calculated by XPRESS (). Semispecific peptides that are increased >8-fold in the KLK2-treated samples were considered as KLK2 cleavage products. The corresponding prime or non-prime sequences were determined bioinf […]

Citations

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XPRESS institution(s)
University of Connecticut Health Center, Farmington, CT, USA; Institute for Systems Biology, Seattle, WA, USA

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