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XSQ Tools specifications
Information
| Unique identifier | OMICS_19770 |
|---|---|
| Name | XSQ Tools |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input format | XSQ, CSFASTA+QUAL |
| Output format | XSQ, CSFASTA+QUAL, FASTQ |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Version | 20120109 |
| Stability | Stable |
| Maintained | No |
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XSQ Tools citations
(3)Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease
[…] amplified. The cDNA library was sequenced on an ABI SOLID 5500 sequencer (Life Technologies) using paired-end 75 + 35 bp runs. For analysis, raw sequencing data was converted to csFastq using SOLiD’s XSQ_Tools and local Perl scripts. Cleaning filters were applied to data files, based on FastQC quality control statistics, and SOLiD sequencing adaptors detected with Cutadapt. Reads were clipped usin […]
The Drosophila ETV5 Homologue Ets96B: Molecular Link between Obesity and Bipolar Disorder
[…] ecularly bar-coded the separation of libraries for control and experimental samples was done effortlessly using respective barcodes. The initial quality analysis was performed using a propriety tool 'XSQ Tools package' provided by the life technologies. This package also provides tools for converting files from XSQ to csfasta format and additionally provides qual files containing read quality info […]
Single Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units
[…] Raw sequence data were converted to FASTQ format using the SOLiD System XSQ Tools, 5′ end adapters and PCR primers were removed using CutAdapt 1.6, sequences were trimmed to 75 bases using FASTXTookit v0.014, and PrinSeq v0.20.4 was used for de-replication (removal of ide […]
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