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XSQ Tools specifications

Information


Unique identifier OMICS_19770
Name XSQ Tools
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format XSQ, CSFASTA+QUAL
Output format XSQ, CSFASTA+QUAL, FASTQ
Operating system Unix/Linux
Computer skills Advanced
Version 20120109
Stability Stable
Maintained No

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XSQ Tools citations

 (3)
library_books

Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease

2016
Sci Rep
PMCID: 4969619
PMID: 27481162
DOI: 10.1038/srep30980

[…] amplified. The cDNA library was sequenced on an ABI SOLID 5500 sequencer (Life Technologies) using paired-end 75 + 35 bp runs. For analysis, raw sequencing data was converted to csFastq using SOLiD’s XSQ_Tools and local Perl scripts. Cleaning filters were applied to data files, based on FastQC quality control statistics, and SOLiD sequencing adaptors detected with Cutadapt. Reads were clipped usin […]

library_books

The Drosophila ETV5 Homologue Ets96B: Molecular Link between Obesity and Bipolar Disorder

2016
PLoS Genet
PMCID: 4900636
PMID: 27280443
DOI: 10.1371/journal.pgen.1006104

[…] ecularly bar-coded the separation of libraries for control and experimental samples was done effortlessly using respective barcodes. The initial quality analysis was performed using a propriety tool 'XSQ Tools package' provided by the life technologies. This package also provides tools for converting files from XSQ to csfasta format and additionally provides qual files containing read quality info […]

library_books

Single Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units

2015
PMCID: 4617633
PMID: 26468746
DOI: 10.1016/j.chom.2015.09.009

[…] Raw sequence data were converted to FASTQ format using the SOLiD System XSQ Tools, 5′ end adapters and PCR primers were removed using CutAdapt 1.6, sequences were trimmed to 75 bases using FASTXTookit v0.014, and PrinSeq v0.20.4 was used for de-replication (removal of ide […]

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