XSTREAM pipeline

XSTREAM specifications

Information


Unique identifier OMICS_10036
Name XSTREAM
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Protein or nucleotide sequences
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline XSTREAM <>

Information


Unique identifier OMICS_10036
Name XSTREAM
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Protein or nucleotide sequences
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline XSTREAM <>

Publication for XSTREAM

XSTREAM IN pipeline

2015
PMCID: 4445274
PMID: 25927556
DOI: 10.1186/s12864-015-1524-2

[…] and divided into three classes. after excluding genes without an open reading frame (orf) ≥ 80 aa, the remaining 138 genes were analyzed by a signalp search, and 35 secreted proteins remained. a xstream screen analysis was carried out, and five genes encoding secreted proteins also contained tandem-arranged repeat units. the fcs in these genes were: unigene18749_tp, 100.016-fold increase; […]

XSTREAM institution(s)
Biomolecular Science and Engineering Program, University of California, Santa Barbara, CA, USA

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