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XTandem Parser specifications
Information
| Unique identifier | OMICS_03353 |
|---|---|
| Name | XTandem Parser |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Java |
| License | Apache License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Publication for XTandem Parser
XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
XTandem Parser citations
(2)Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective☆
[…] The Compomics framework provides different Java-based parsers for well-known search engines: MascotDatfile , OMSSA Parser , XTandem Parser , and Thermo-MSF-Parser , for Proteome Discoverer. It also provides the jTraML library for the TraML standard file format. Also, PeptideShaker supports the creation of a well-annotated […]
Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML*
[…] x (emPAI) protocol for quantitation based on spectral counting (), and file format converters developed on top of two open-source APIs produced by Martens's group, namely, the OMSSA Parser () and the XTandem Parser (), which can read the OMSSA XML format (OMX files) and X!Tandem XML files, respectively.Code was created to connect the APIs over the OMSSA and X!Tandem formats to objects within jmzId […]
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