YAMB specifications

Information


Unique identifier OMICS_33822
Name YAMB
Alternative name Yet Another Metagenome Binner
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A metagenome assembly and sequencing reads.
Input format FASTA+FASTQ
Output format CSV+PNG+FASTA
Operating system Unix/Linux
Programming languages Perl, R, Shell (Bash)
License MIT License
Computer skills Advanced
Stability Stable
Requirements
Bash , ggplot2, Rtsne, getopt, dbscan, samtools, bowtie2, esl-sfetch
Maintained Yes

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Maintainer


  • person_outline Aleksei Korzhenkov <>

Publication for Yet Another Metagenome Binner

YAMB institution(s)
NRC “Kurchatov Institute”, Moscow, Russia

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