Yanagi specifications

Information


Unique identifier OMICS_30723
Name Yanagi
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A transcriptome annotation file and a transcript sequences file.
Input format GTF+FASTA
Output data A set of segments and its sequences.
Output format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Mohamed Gunady

Additional information


http://drops.dagstuhl.de/opus/volltexte/2017/7648/pdf/LIPIcs-WABI-2017-10.pdf

Publication for Yanagi

Yanagi institution(s)
Department of Computer Science, University of Maryland, College Park, MD, USA; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA
Yanagi funding source(s)
Supported by NSF grant ABI 1564785 and NIH grants HG005220 and GM114267.

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