Yeast Intron Database specifications

Information


Unique identifier OMICS_01890
Name Yeast Intron Database
Restrictions to use None
Community driven No
User data submission Not allowed
Version 4.3
Maintained Yes

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Publications for Yeast Intron Database

Yeast Intron Database citation

library_books

The chromatin remodeling complex Swi/Snf regulates splicing of meiotic transcripts in Saccharomyces cerevisiae

2017
Nucleic Acids Res
PMCID: 5570110
PMID: 28637241
DOI: 10.1093/nar/gkx373

[…] sing Illumina Truseq® V3 kit and ribosomal RNA depletion (Ribo-Zero, Illumina). Single-end, 50 nucleotide sequence reads (HiSeq 2000) were aligned to SacCer3 and spliced transcripts from the Ares Lab Yeast Intron Database Version 3 () in a single step using STAR () with a maximum of two mismatches and a minimum overhang of four nucleotides for spliced alignments. In the case of reads aligning to m […]

Yeast Intron Database institution(s)
Department of Molecular, Cell, and Developmental Biology, Center for Molecular Biology of RNA, Sinsheimer Laboratories, University of California, Santa Cruz, CA, USA
Yeast Intron Database funding source(s)
Supported by the W. M. Keck Foundation grant to the RNA Center at Santa Cruz, and by grants from the National Institutes of Health (CA 77813 and GM 40478).

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