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YeastCyc specifications

Information


Unique identifier OMICS_14214
Name YeastCyc
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 19.1
Maintained Yes

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Documentation


Maintainer


  • person_outline Peter D Karp

Publication for YeastCyc

YeastCyc citations

 (4)
library_books

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

2018
PMCID: 5946812
PMID: 29762652
DOI: 10.1093/database/bay035

[…] e curation, and Pathway Tools generated and manually curated PGDBs have been created across the domains of life, including bacteria [Escherichia coli in EcoCyc ()], fungi (Saccharomyces cerevisiae in YeastCyc http://yeast.biocyc.org/), mammals [Bos taurus in CattleCyc ()] and plants such as Arabidopsis thaliana in AraCyc (, ), Medicago truncatula in MedicCyc (), Fragaria vesca in FragariaCyc (), O […]

library_books

InfAcrOnt: calculating cross ontology term similarities using information flow by a random walk

2018
BMC Genomics
PMCID: 5780854
PMID: 29363423
DOI: 10.1186/s12864-017-4338-6

[…] P-MF terms for yeast []. Then the similar experiment was done on yeast. The set was generated based on their co-occurrence enzymes []. Finally, 175 pairs of BP-MF terms related with common enzymes by YeastCyc [] were obtained for yeast as PG, and corresponding 1750 random pairs were obtained as a NG. The WTGGN for calculating term pair similarity was built based on GO, GOA for yeast, and YeastNet […]

library_books

Sequencing and annotation of the Ophiostoma ulmi genome

2013
BMC Genomics
PMCID: 3618308
PMID: 23496816
DOI: 10.1186/1471-2164-14-162

[…] See (data on our website) for gene-EC mappings and for corresponding evidences. Yeast and Arabidopsis thaliana EC numbers were obtained by combining species-specific datasets from BRENDA and BioCyc (YeastCyc and AraCyc, respectively). […]

library_books

Web based metabolic network visualization with a zooming user interface

2011
BMC Bioinformatics
PMCID: 3113945
PMID: 21595965
DOI: 10.1186/1471-2105-12-176

[…] es including JavaScript, AJAX, and OpenLayers. This Web-based diagram is now available for BioCyc, and once installed will be available for other Pathway Tools based metabolic databases (DBs) such as YeastCyc (pathway.yeastgenome.org), MouseCyc [], and AraCyc []. […]

Citations

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YeastCyc institution(s)
SRI International, Menlo Park, CA, USA; FCEN, University of Buenos Aires and CONICET, Argentina; Boyce Thompson Institute for Plant Research, Ithaca, NY, USA
YeastCyc funding source(s)
This work was supported by the National Institute of General Medical Sciences of the National Institutes of Health (NIH) [(GM080746, GM077678, GM75742).

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