YEASTRACT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool YEASTRACT
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Tool usage distribution map

This map represents all the scientific publications referring to YEASTRACT per scientific context
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Associated diseases

This word cloud represents YEASTRACT usage per disease context
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Popular tool citations

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Protocols

YEASTRACT specifications

Information


Unique identifier OMICS_00547
Name YEASTRACT
Alternative name Yeast Search for Transcriptional Regulators And Consensus Tracking
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Subtools


  • MUSA (Motif finding using an UnSupervised App
  • YEASTRACT-DISCOVERER

Maintainers


  • person_outline YEASTRACT Team
  • person_outline Isabel Sa-Correia

Additional information


http://www.yeastract.com/tutorial.php

Publication for Yeast Search for Transcriptional Regulators And Consensus Tracking

YEASTRACT citations

 (40)
library_books

Arbuscular Mycorrhizal Fungal 14 3 3 Proteins Are Involved in Arbuscule Formation and Responses to Abiotic Stresses During AM Symbiosis

2018
Front Microbiol
PMCID: 5844941
PMID: 29556216
DOI: 10.3389/fmicb.2018.00091

[…] ture of Fm201 protein was done with the program Swiss Model using Homo sapiens 14-3-3ε protein (2br9A) as the template (Figure ; ). The cis-elements of the promoters Fm201 and RiBMH2 were analyzed on YEASTRACT using S. cerevisiae S288c as the reference.Yeast mutant strains used in this article are constructed with the methods mentioned by van Heusden (, ). The detail information for each strain is […]

library_books

Effects of Temperature on the Meiotic Recombination Landscape of the Yeast Saccharomyces cerevisiae

2017
MBio
PMCID: 5736917
PMID: 29259092
DOI: 10.1128/mBio.02099-17

[…] Identification of transcription factors (TFs) that bind promoter region of ORFs was conducted using the Yeastract website (http://www.yeastract.com/). Mann-Whitney tests and chi-square tests were performed using VassarStat (http://vassarstats.net). t tests were performed using the t test function in Exc […]

call_split

The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

2017
Biotechnol Biofuels
PMCID: 5713069
PMID: 29213328
DOI: 10.1186/s13068-017-0984-9
call_split See protocol

[…] or analysis was conducted using a previously published method [, ]. The differentially expressed genes identified by the RNA-seq analysis were searched against all of the transcription factors in the YEASTRACT database (http://www.yeastract.com). The number of genes that a transcription factor can regulate in the pool of differentially expressed genes was calculated by YEASTRACT database. Then thi […]

library_books

Efficient protein production by yeast requires global tuning of metabolism

2017
Nat Commun
PMCID: 5656615
PMID: 29070809
DOI: 10.1038/s41467-017-00999-2

[…] Analysis of Omics (PIANO) R package with GO terms information from the Saccharomyces Genome Database (http://www.yeastgenome.org) and information on regulatory interactions between TFs and genes from Yeastract (http://www.yeastract.com). Differential expression level of genes (log2FoldChange) and corresponding significant levels (adjusted p-values, calculated by the Benjamini–Hochberg method) were […]

library_books

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae

2017
Nucleic Acids Res
PMCID: 5753369
PMID: 29036684
DOI: 10.1093/nar/gkx842

[…] The YEASTRACT (YEAst Search for Transcriptional Regulators And Consensus Tracking; www.yeastract.com) database was released in 2006 () to provide free access to all published information on transcriptiona […]

library_books

Rapid functional and evolutionary changes follow gene duplication in yeast

2017
PMCID: 5577496
PMID: 28835561
DOI: 10.1098/rspb.2017.1393

[…] he codon adaptation index, as measured by CodonW (electronic supplementary material, table S3). These differences also do not disrupt any known transcription factor binding sites as identified in the Yeastract database []. […]


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YEASTRACT institution(s)
Instituto Superior Tecnico, Universidade de Lisboa, Lisbon, Portugal; IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Lisbon, Portugal; INESC-ID, Knowledge Discovery and Bioinformatics Group, Lisbon, Portugal
YEASTRACT funding source(s)
Supported by FCT-Fundacao para a Ciencia e a Tecnologia, under the contracts [Pest-OE/EQB/LA0023/2011_research line: Systems and Synthetic Biology, ERA-IB/0002/2010, PTDC/EIA-EIA/111239/2009, PTDC/EIA-CCO/118522/ 2010] and postdoctoral and PhD grants.

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