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YeATSAM

Annotates genome by using information encoded by the transcriptome. YeATSAM splits the assembled transcriptome into multiple open reading frames (ORFs). It was tested on the chickpea transcriptome and appears to be able to identify average 1000 proteins that were not annotated in the NCBI database. The tool appears to be complementary with MAKER-P for the identification of different genes: YeATSAM failed to annotate average 700 genes identified by MAKER-P, while identifying average 4000 genes missed by MAKER-P.

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YeATSAM classification

YeATSAM specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable

YeATSAM distribution

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YeATSAM support

Maintainer

  • Sandeep Chakraborty <>

Credits

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Publications

Institution(s)

Department of Plant Sciences, University of California, Davis, CA, USA

Funding source(s)

Supported by grant support from the California Walnut Board.

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