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Identifies haplogroups from low coverage sequence data. YHap uses an imputation framework to jointly predict Y chromosome genotypes and assign Y haplogroups using low coverage population sequence data. Borrowing information across multiple samples within a population using an imputation framework enables accurate Y haplogroup assignment.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
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  • (Zhang et al., 2013) YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data. BMC bioinformatics.
    PMID: 24252171

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