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YLoc specifications

Information


Unique identifier OMICS_01638
Name YLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for YLoc

YLoc in publications

 (3)
PMCID: 5379732
PMID: 28372538
DOI: 10.1186/s12864-017-3619-4

[…] amino acids were screened with the programs signalp4.0, sigcleave, phobius 1.01 and targetp 1.1 for signal peptides [–]. if targetp predicted a mitochondrial localization and either wolf psort or yloc confirmed this prediction [–], the protein was excluded from the pool of candidate effectors. all proteins with a signal protein according to three out of the four signal prediction programs […]

PMCID: 4812658
PMID: 27025596
DOI: 10.1186/s12870-016-0761-0

[…] gene structure. the prediction of targeting peptides at the n-terminus was done using predotar v.1.03, wolf sport, mitoprot, targetp, chlorop [–], whilst the dual targeting was predicted by yloc+[]., the mrna levels of ptra/ninv in trifoliate orange and transgenic plants were determined by qrt-pcr. the extraction of the total rna and the synthesis of the first strand cdna were carried […]

PMCID: 4262225
PMID: 25128015
DOI: 10.1186/1756-3305-7-368

[…] were downloaded from the genbank databases., from the orfs inferred from spaes, secreted proteins were predicted using a combination of four programs (orfpredictor [], signalp [], tmhmm [] and yloc []) to minimize the number of false positive predictions. firstly, we identified protein-coding regions of orfs in spaes by starting exactly at the initiation codon encoding the amino acid […]


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YLoc institution(s)
Division for Simulation of Biological Systems, Universität Tübingen, Tübingen, Germany

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