YM500 protocols

View YM500 computational protocol

YM500 statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left IsomiR detection ncRNA identification chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

YM500 specifications

Information


Unique identifier OMICS_00386
Name YM500
Interface Web user interface
Restrictions to use None
Database management system Other
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Hsei-Wei Wang <>

Additional information


http://driverdb.tms.cmu.edu.tw/ym500v3/tutorial.php

Publications for YM500

YM500 in pipeline

2016
PMCID: 5067774
PMID: 27752128
DOI: 10.1038/srep35664

[…] custom perl scripts. expression values for mir-21-5p in the tcga dataset were retrieved from the tcga website, while mir-21-5p + c and adenylated variant expression values were retrieved from the ym500 database., for luciferase assays, the relative, normalised luminescence values were plotted as mean ± standard deviation (s.d.) and for real-time qrt-pcrs, the relative, normalised expression […]


To access a full list of citations, you will need to upgrade to our premium service.

YM500 in publications

 (8)
PMCID: 5941226
PMID: 29739921
DOI: 10.1038/s41419-018-0490-4

[…] signaling pathway, like vegf and vegfr signaling network (supplementary fig. ). to further investigate the clinical significance of mir-181a in colorectal carcinoma, we used an online database, ym500, to analyze the os rate of colorectal adenocarcinoma patients depending on the mir-181a expression level and observed that patients with higher mir-181a expression had worse survival (fig. ). […]

PMCID: 5775639
PMID: 29351796
DOI: 10.1186/s12943-017-0751-3

[…] target hur. as shown in fig. , 50 mirnas were identified as possible candidates. previously, we identified 237 mirnas that were significantly altered in crc samples using computational algorithm ym500 [] (fig. ). by sorting the overlap between targetscan results and ym500 results, 25 mirnas common to both sets were chosen for further verification (fig. ). a qrt-pcr assay was performed […]

PMCID: 5727306
PMID: 29034995
DOI: 10.1002/cam4.1214

[…] we conjectured that mirnas might also be involved in regulating src expression in esophageal cancer., in order to screen potential mirnas that might participate in the tumorigenesis, we employed ym500 v2 to analysis the mirs array profiling of 72 esophageal cancer samples and nine normal esophagus samples. twenty mirnas with most significant expression disparity were shown in the heat map […]

PMCID: 5459991
PMID: 28555645
DOI: 10.1038/ncomms15622

[…] to the cloned ago1/s-parna associated small rna using blastn and ssearch methods, respectively. small rna-seq databases were searched for mir-4534 and related isomir sequences. mirgator and ym500 (ref. ) include deep sequencing data from human samples collected from geo, sra and tcga archives. using the provided software we retrieved all isomirs with up to two mismatches relative […]

PMCID: 5336638
PMID: 28257633
DOI: 10.1186/s12943-017-0625-8

[…] antibodies against tia1, cmyc, pdcd4 and gapdh were purchased from santa cruz biotechnology (sc-365349, sc-40, sc-130545 and sc-25778, respectively; santa cruz, ca, usa)., we used an online database ym500 to analyze and compare the mirna expression in colon cancer tissues and normal solid tissues. this database compared the mirna expression profiles between 8 normal solid colon tissues and 429 […]


To access a full list of publications, you will need to upgrade to our premium service.

YM500 institution(s)
Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan; Department of Obstetrics and Gynecology, Hsinchu MacKay Memorial Hospital, Hsinchu City, Taiwan; Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan; Research Center for Tumour Medical Science, China Medical University, Taichung, Taiwan; Department of Genome Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan; Center for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan
YM500 funding source(s)
Supported by Ministry of Science and Technology (MOST) (MOST 105-2320-B-039-006 and 105-2628-E-010-002-MY2), China Medical University (CMU105-N-06), Hsinchu MacKay Memorial Hospital, Taiwan (MMH-HB-10515 and 1558213).

YM500 reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review YM500