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YM500

Provides small RNA (smRNA) sequencing in human cancer research. YM500 not only focuses on miRNAs but also on other functional small non-coding RNAs (sncRNAs), such as PIWI-interacting RNAs (piRNAs), tRNA-derived fragments (tRFs), small nuclear RNAs (snRNAs) and small nucleolar RNAs (snoRNAs). YM500 contains more than 11000 cancer-related smRNA and 10000 RNA-seq datasets. YM500, through its web interface, allows users to: (i) search for small RNA expression, (ii) search for miRNA Isoform, (iii) search for Novel miRNA, (iv) search for miRNA’s arm switching, (v) drive meta-analysis, (vi) drive survival analysis, (vii) drive cancer analysis, (viii) download their results.

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YM500 classification

  • Animals
    • Homo sapiens

YM500 specifications

Interface:
Web user interface
Database management system:
Other
Version:
3.0
Maintained:
Yes
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable

YM500 support

Maintainer

  • Hsei-Wei Wang <>

Additional information

http://driverdb.tms.cmu.edu.tw/ym500v3/tutorial.php

Credits

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Publications

Institution(s)

Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan; Department of Obstetrics and Gynecology, Hsinchu MacKay Memorial Hospital, Hsinchu City, Taiwan; Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan; Research Center for Tumour Medical Science, China Medical University, Taichung, Taiwan; Department of Genome Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan; Center for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan

Funding source(s)

Supported by Ministry of Science and Technology (MOST) (MOST 105-2320-B-039-006 and 105-2628-E-010-002-MY2), China Medical University (CMU105-N-06), Hsinchu MacKay Memorial Hospital, Taiwan (MMH-HB-10515 and 1558213).

Link to literature

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