YODA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool YODA
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Tool usage distribution map

This map represents all the scientific publications referring to YODA per scientific context
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Associated diseases

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Popular tool citations

chevron_left Oligonucleotide design chevron_right
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YODA specifications

Information


Unique identifier OMICS_26635
Name YODA
Alternative name Yet-another Oligonucleotide Design Application
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for Yet-another Oligonucleotide Design Application

YODA citations

 (2)
library_books

HTSFinder: Powerful Pipeline of DNA Signature Discovery by Parallel and Distributed Computing

2016
Evol Bioinform Online
PMCID: 4750899
PMID: 26884678
DOI: 10.4137/EBO.S35545

[…] m implements a lock-free hash table optimization for counting k-mers up to 31 bases in length.There are other approaches to find signatures or probe sequences, such as PROBESEL, OligoArray, OligoWiz, YODA, PRIMROSE, and ARB-ProbeDesign. All of them are limited to one selected target or single sequence in each run; thus, they are not applicable for large datasets.In practice, despite the respected […]

library_books

An evaluation of custom microarray applications: the oligonucleotide design challenge

2009
Nucleic Acids Res
PMCID: 2665234
PMID: 19208645
DOI: 10.1093/nar/gkp053

[…] goFaktory (63.9%). Sensitivity can also be adjusted by adapting the oligonucleotide size to fit within the Tm and GC percent set up by the software. OligoArray, OligoPicker, ArrayOligoSelector, ROSO, YODA, CommOligo and Mprime design all the oligonucleotides with the same size (50 bp). The other software programs adapt the oligonucleotide size to optimize Tm distribution (). This size distribution […]


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YODA institution(s)
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
YODA funding source(s)
Supported by DoD grant (DAAD 13-02-C-0018).

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