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Citations per year

Number of citations per year for the bioinformatics software tool Z-Spacing

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This map represents all the scientific publications referring to Z-Spacing per scientific context
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Z-Spacing specifications


Unique identifier OMICS_14438
Name Z-Spacing
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Stephan Saalfeld

Publication for Z-Spacing

Z-Spacing citation


Image based correction of continuous and discontinuous non planar axial distortion in serial section microscopy

PMCID: 5860381
PMID: 28453669
DOI: 10.1093/bioinformatics/btw794

[…] before and after section order correction are shown in and for TSP (PMCC and SIFT inlier ratio) and section spacing (PMCC and xz-cross-section), respectively. Note that, for (2), section order and z-spacing are estimated simultaneously and therefore the sorted matrix appears warped. TSP re-established the correct section order for both PMCC and SIFT inlier ratio. The run times for optimization […]

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Z-Spacing institution(s)
HHMI Janelia Research Campus, Ashburn, VA, USA
Z-Spacing funding source(s)
This work has been supported by a University of Texas at Arlington Phi Sigma Society Grant and NSF DDIG grants (NSF DEB-1501886 and NSF DEB-1501747).

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