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ZCURVE specifications


Unique identifier OMICS_08761
Interface Web user interface
Restrictions to use None
Input data Genome sequence (FASTA or multi FASTA format)
Computer skills Basic
Version 3.0
Stability No
Maintained No


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Publications for ZCURVE

ZCURVE citations


A Comprehensive Overview of Online Resources to Identify and Predict Bacterial Essential Genes

Front Microbiol
PMCID: 5711816
PMID: 29230204
DOI: 10.3389/fmicb.2017.02331

[…] ction. The predicted result will be presented on the jumping window or be sent to users by e-mail ().The basic information of the online essential gene prediction servers including CEG_Match, Geptop, ZCURVE 3.0, EGP and BLAST tool in DEG are presented in Table . The differences in the use of each tool are also listed. Researchers can choose the suitable servers according to actual conditions. We t […]


Detection of alpha and betacoronaviruses in rodents from Yunnan, China

Virol J
PMCID: 5446729
PMID: 28549438
DOI: 10.1186/s12985-017-0766-9

[…] other representative CoVs with complete genomes available. The open reading frames (ORFs), deduced amino acid sequences, and potential cleavage sites in orf1ab were predicted by ORF Finder (NCBI) and ZCURVE_CoV 2.0 []. Sequence alignment and editing were performed using ClustalW (Version 2.0), BioEdit (Version 7.1.9), and Geneious (Version 5.5.9) [, ]. The spike (S) protein structure of AcCoV-JC34 […]


Chemotaxis without Conventional Two Component System, Based on Cell Polarity and Aerobic Conditions in Helicity Switching Swimming of Spiroplasma eriocheiris

Front Microbiol
PMCID: 5289999
PMID: 28217108
DOI: 10.3389/fmicb.2017.00058

[…] Putative protein coding sequences (CDSs) were identified by Glimmer3 (Delcher et al., ) and ZCURVE 1.0 (Guo et al., ). Functional annotation of CDSs was performed through BLASTP searches against GenBank's non-redundant (nr) protein database, followed by manual inspection. Transfer RNA genes […]


Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1

Virol J
PMCID: 4802629
PMID: 27000701
DOI: 10.1186/s12985-016-0490-x

[…] IGR were used to compare the ØVC8 genome sequence against the sequences of proteins reported in the databases. Open reading frames (ORFs) identified using the Glimmer3, Meta GeneAnnotator, GeneMarkS, ZCURVE_V, and EasyGene gene prediction programs were grouped as a single locus. tRNAs and rRNAs were predicted using the tRNAscan-SE, Rfam, and ARNmmer programs. The pI/MW program was used to calculat […]


Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis

Sci Rep
PMCID: 4707488
PMID: 26750304
DOI: 10.1038/srep19081

[…] Putative CDS were identified by Glimmer 3.02 and ZCURVE 1.02, and peptides shorter than 30 amino acids were eliminated. Insert sequences were first detected using the IS Finder database (http://www-is.biotoul.fr/is.html) using the default parameters […]


Genome Sequence of Bacillus endophyticus and Analysis of Its Companion Mechanism in the Ketogulonigenium vulgare Bacillus Strain Consortium

PLoS One
PMCID: 4527741
PMID: 26248285
DOI: 10.1371/journal.pone.0135104

[…] WISS-PROT [] and Clusters of Orthologous Groups of proteins database (COG) []. The tRNAs and rRNAs were predicted by tRNAscan-SE [] and RNAmmer [], respectively. The essential genes were predicted by ZCURVE 3.0 [] and DEG 10 [], respectively. The subcellular location of proteins and the signal peptides were commented by PSORT [] and SignalP 4.0 [], respectively. The origin of replication (oriC) an […]


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ZCURVE institution(s)
Department of Physics, Tianjin University, Tianjin, China

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