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ZCURVE specifications

Information


Unique identifier OMICS_08761
Name ZCURVE
Interface Web user interface
Restrictions to use None
Input data Genome sequence (FASTA or multi FASTA format)
Computer skills Basic
Version 3.0
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publications for ZCURVE

ZCURVE citations

 (27)
library_books

A Comprehensive Overview of Online Resources to Identify and Predict Bacterial Essential Genes

2017
Front Microbiol
PMCID: 5711816
PMID: 29230204
DOI: 10.3389/fmicb.2017.02331

[…] ction. The predicted result will be presented on the jumping window or be sent to users by e-mail ().The basic information of the online essential gene prediction servers including CEG_Match, Geptop, ZCURVE 3.0, EGP and BLAST tool in DEG are presented in Table . The differences in the use of each tool are also listed. Researchers can choose the suitable servers according to actual conditions. We t […]

library_books

Detection of alpha and betacoronaviruses in rodents from Yunnan, China

2017
Virol J
PMCID: 5446729
PMID: 28549438
DOI: 10.1186/s12985-017-0766-9

[…] other representative CoVs with complete genomes available. The open reading frames (ORFs), deduced amino acid sequences, and potential cleavage sites in orf1ab were predicted by ORF Finder (NCBI) and ZCURVE_CoV 2.0 []. Sequence alignment and editing were performed using ClustalW (Version 2.0), BioEdit (Version 7.1.9), and Geneious (Version 5.5.9) [, ]. The spike (S) protein structure of AcCoV-JC34 […]

library_books

Chemotaxis without Conventional Two Component System, Based on Cell Polarity and Aerobic Conditions in Helicity Switching Swimming of Spiroplasma eriocheiris

2017
Front Microbiol
PMCID: 5289999
PMID: 28217108
DOI: 10.3389/fmicb.2017.00058

[…] Putative protein coding sequences (CDSs) were identified by Glimmer3 (Delcher et al., ) and ZCURVE 1.0 (Guo et al., ). Functional annotation of CDSs was performed through BLASTP searches against GenBank's non-redundant (nr) protein database, followed by manual inspection. Transfer RNA genes […]

library_books

Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1

2016
Virol J
PMCID: 4802629
PMID: 27000701
DOI: 10.1186/s12985-016-0490-x

[…] IGR were used to compare the ØVC8 genome sequence against the sequences of proteins reported in the databases. Open reading frames (ORFs) identified using the Glimmer3, Meta GeneAnnotator, GeneMarkS, ZCURVE_V, and EasyGene gene prediction programs were grouped as a single locus. tRNAs and rRNAs were predicted using the tRNAscan-SE, Rfam, and ARNmmer programs. The pI/MW program was used to calculat […]

library_books

Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis

2016
Sci Rep
PMCID: 4707488
PMID: 26750304
DOI: 10.1038/srep19081

[…] Putative CDS were identified by Glimmer 3.02 and ZCURVE 1.02, and peptides shorter than 30 amino acids were eliminated. Insert sequences were first detected using the IS Finder database (http://www-is.biotoul.fr/is.html) using the default parameters […]

library_books

Genome Sequence of Bacillus endophyticus and Analysis of Its Companion Mechanism in the Ketogulonigenium vulgare Bacillus Strain Consortium

2015
PLoS One
PMCID: 4527741
PMID: 26248285
DOI: 10.1371/journal.pone.0135104

[…] WISS-PROT [] and Clusters of Orthologous Groups of proteins database (COG) []. The tRNAs and rRNAs were predicted by tRNAscan-SE [] and RNAmmer [], respectively. The essential genes were predicted by ZCURVE 3.0 [] and DEG 10 [], respectively. The subcellular location of proteins and the signal peptides were commented by PSORT [] and SignalP 4.0 [], respectively. The origin of replication (oriC) an […]

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ZCURVE institution(s)
Department of Physics, Tianjin University, Tianjin, China

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