ZENBU protocols

ZENBU specifications

Information


Unique identifier OMICS_03444
Name ZENBU
Interface Web user interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche
Programming languages C++, Javascript
Parallelization MapReduce
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline nicolas.bertin <>
  • person_outline Alistair Forrest <>

Publication for ZENBU

ZENBU IN pipeline

2014
PMCID: 4161876
PMID: 25164183
DOI: 10.1186/1471-2164-15-729

[…] [44]. out of 499 regions, 100 had more tags than the 3rd quartile and 15 had more than 100 tags, an arbitrary cutoff that we chose after visual inspection of the data in fantom5’s instance of the zenbu genomic browser [45], which showed that lower scores were enriched for apparently spurious accumulation of tags near pseudogenes., brain tissue was obtained from the institute of neuropathology […]

ZENBU institution(s)
RIKEN Center for Life Science Technologies (Division of Genomic Technologies), Suehiro-cho, Tsurumi-ku, Yokohama, Japan; RIKEN Omics Science Center (OSC), Yokohama, Japan; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan; Cancer Science Institute of Singapore, National University of Singapore, Singapore
ZENBU funding source(s)
Supported by a research grant for RIKEN Omics Science Center from the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), a grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan, Research Grants from MEXT through RIKEN Preventive Medicine and Diagnosis Innovation Program and RIKEN Center for Life Science Technologies, Division of Genomic Technologies.

ZENBU reviews

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Anonymous user #688

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Web
An useful browser which allow to visualise and analyse sequencing dataset "on the fly".
Anonymous user #687's avatar image No country

Anonymous user #687

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Web
Very useful browser. The dynamic data massaging via script offers great possibilities to browse ENCODE data in ways that UCSC does not offer