ZINBA specifications

Unique identifier:
OMICS_00465
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Name:
Zero-Inflated Negative Binomial Algorithm
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
2.02.03
Maintained:
Yes

versioning

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ZINBA support

Documentation

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Credits

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Publications

Institution(s)

Department of Biostatistics, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Biology, Carolina Center for Genome Sciences, and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Genetics and School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA

Funding source(s)

This work was supported by the NIH Biostatistics Training Grant in Cancer Genomics and NIH grants Bayesian Approaches to Model Selection for Survival Data (GM70335), Inference with Missing Covariates in Regression Models (CA74015), and ENCODE grant U54 HG004563.

User review

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1 user review

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Fabien Pichon's avatar image Fabien Pichon's country flag

Fabien Pichon

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Too many files to generate for each experiment (very time consuming!) for a result far from satisfying.
To balance my comment, I have to say that I used ZINBA on FAIRE-seq which is relatively more noisy compared to ChIP-seq.
But another black point is that there is almost no support for a lot issues and instabilities.
For FAIRE-seq I would prefer Fseq and for ChIP-seq I would prefer MACS.