Zerone protocols

View Zerone computational protocol

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Zerone specifications

Information


Unique identifier OMICS_12114
Name Zerone
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Guillaume Filion <>

Publication for Zerone

Zerone in pipeline

2017
PMCID: 5570105
PMID: 28472346
DOI: 10.1093/nar/gkx364

[…] –fix-bimodal –extsize 100 call summits -q 0.01’. the bdgcmp function of macs2 was used to refine the resulting peaks using the ‘poisson pvalue’ (ppois) method. aligned reads were discretized using zerone (version 1.0) (). the discretized profiles were then used to generate scatter plots. the scatter plots for the three biological replicates and each condition is shown in . one […]


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Zerone in publication

PMCID: 5570105
PMID: 28472346
DOI: 10.1093/nar/gkx364

[…] –fix-bimodal –extsize 100 call summits -q 0.01’. the bdgcmp function of macs2 was used to refine the resulting peaks using the ‘poisson pvalue’ (ppois) method. aligned reads were discretized using zerone (version 1.0) (). the discretized profiles were then used to generate scatter plots. the scatter plots for the three biological replicates and each condition is shown in . one […]


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Zerone institution(s)
Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain
Zerone funding source(s)
Supported by the Government of Catalonia and the Spanish Ministery of Economy and Competitiveness (Plan Nacional BFU2012-37168, Centro de Excelencia Severo Ochoa 20132017 SEV-20120208), the Spanish Ministry of Economy and Competitiveness [State Training Subprogram: predoctoral fellowships for the training of PhD students (FPI) 2013].

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