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zflncRNApedia specifications


Unique identifier OMICS_10273
Name zflncRNApedia
Restrictions to use None
Maintained Yes


  • Vertebrates
    • Danio rerio


  • person_outline Hee Dhiman

Publication for zflncRNApedia

zflncRNApedia citations


Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish

Sci Rep
PMCID: 5430783
PMID: 28455512
DOI: 10.1038/s41598-017-00823-3

[…] were obtained using the Cuffcompare script with the Ensembl annotation file (Danio_rerio.Zv9.79.gtf). The annotated lincRNAs in Ensembl were also obtained in this step. The annotated lincRNAs in the zflncRNApedia database were obtained using the Cuffcompare script with the zflncRNApedia annotation. The remaining novel candidate transcripts were then filtered in 5 steps: 1) FPKM value greater than […]


Long non coding RNA Databases in Cardiovascular Research

PMCID: 4996844
PMID: 27049585
DOI: 10.1016/j.gpb.2016.03.001

[…] n be found in LncReg , DIANA-LncBase , or lncRNAMap . Many of these databases provide information for human and murines only, but there are also databases specialized in other model organisms such as zflncRNApedia for zebrafish (Danio rerio) or PLncDB for Arabidopsis thaliana. […]

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zflncRNApedia institution(s)
GN Ramachandran Knowledge Center for Genome Informatics, CSIR–Institute of Genomics and Integrative Biology, Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi, India; Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Delhi, India
zflncRNApedia funding source(s)
Authors acknowledge funding from the Council of Scientific and Industrial Research (CSIR) India through grant BSC0123 (GENCODE-C).

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