zFPKM pipeline

zFPKM specifications

Information


Unique identifier OMICS_20121
Name zFPKM
Alternative name NFPKM
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.99.18
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Traver Hart <>
  • person_outline Ron Ammar <>

Additional information


Manual: http://bioconductor.org/packages/devel/bioc/manuals/zFPKM/man/zFPKM.pdf

Publication for zFPKM

zFPKM citation

2016
PMCID: 4879514

[…] of gene ontology terms were performed with the r bioconductor package goseq (young et al. 2010). significant go terms were bonferroni corrected for multiple testing. r scripts for calculating zfpkm, p st and τ are available online at https://github.com/severinevo/gene_expression., data for the number of protein–protein interactions of chicken genes were obtained from the funcoup v. 3.0 […]

zFPKM institution(s)
Donnelly Centre, Banting & Best Department of Medical Research, University of Toronto, Toronto, ON, Canada; Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA
zFPKM funding source(s)
Supported by NIH grants U19 AI063603, U01 AI084146 and U01 AI063594 (ARRA); by National Institutes of Health TL1 RR025772–03.

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