zipHMM specifications

Information


Unique identifier OMICS_27293
Name zipHMM
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Kasper Munch Terkelsen

zipHMM citation

library_books

zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm

2013
BMC Bioinformatics
PMCID: 4222747
PMID: 24266924
DOI: 10.1186/1471-2105-14-339

[…] All the C++ classes in the library are wrapped in a Python module so the full functionality of the zipHMM is available for Python scripting using essentially the same API, except with a more Python flavour where appropriate, e.g. reading in data is handled by returning multiple values from function […]

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