ZODET specifications

Information


Unique identifier OMICS_04845
Name ZODET
Alternative name z-score outlier detection
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for z-score outlier detection

ZODET citations

 (2)
library_books

KAOS: a new automated computational method for the identification of overexpressed genes

2016
BMC Bioinformatics
PMCID: 5123341
PMID: 28185541
DOI: 10.1186/s12859-016-1188-1

[…] rom both tumour and normal tissue counterpart and cannot therefore be applied in the cases where normal counterpart is not available or in the profiling of cancer cell lines.Other approaches, such as ZODET [] or the method proposed by Kothary and colleagues [], search for abnormalities in the gene expression profile of an individual compared to a reference population. While GTI and COPA search sub […]

library_books

Disruption of macrophage pro inflammatory cytokine release in Crohn's disease is associated with reduced optineurin expression in a subset of patients

2014
Immunology
PMCID: 4264909
PMID: 24943399
DOI: 10.1111/imm.12338

[…] hown). We hypothesized that subgroups of individuals within the CD population might share common abnormalities in gene expression which could influence cytokine secretion and searched for these using ZODET. This method enables the identification of gross abnormalities in gene expression in individual patients’ transcriptomes, which can be combined to identify potential subpopulations. MDM expresse […]

ZODET institution(s)
Division of Medicine, University College London, London, UK

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