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Zorro specifications

Information


Unique identifier OMICS_15663
Name Zorro
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.7.3
Stability Beta
Requirements
Numpy, Scipy, pyfftw, matplotlib, mrcz
Maintained Yes

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Maintainer


  • person_outline Robert McLeod <>

Publication for Zorro

Zorro in publications

 (43)
PMCID: 5902063
PMID: 29617440
DOI: 10.1371/journal.ppat.1006966

[…] we generated references by refining, ordering, and concatenating the best draft assembly in the sc. a second de novo assembly was generated with spades and assemblies were then merged using zorro []. after this, sspace and gapfiller were used to scaffold the assembly and remove ns [,]. final contigs were ordered using mauve, manually curated using act, and concatenated []. filtered […]

PMCID: 5953543
PMID: 29697049
DOI: 10.7554/eLife.34292.028

[…] relevant genome sequences deposited in genbank ()., alphaproteobacterial proteins were aligned based on their hmm profiles in the phyla-amphora database and ambiguously aligned regions removed using zorro as implemented in phyla-amphora (). initial single gene trees were constructed using the lg4x model implemented in iq-tree 1.5.5 and manually inspected for in-paralogues. these 200 marker genes […]

PMCID: 5732494
PMID: 29246165
DOI: 10.1186/s13028-017-0353-5

[…] council of ministers (nmr norden) is acknowledged for financial support to the project entitled infectious zoonotic diseases transmissible from harvested wildlife to humans in the european arctic (zorro). we also acknowledge bonus balthealth that has received funding from bonus (art. 185), funded jointly by the eu, innovation fund denmark (grants 6180-00001b and 6180-00002b), forschungszentrum […]

PMCID: 5913393
PMID: 29720890
DOI: 10.1007/s10683-017-9541-4

[…] because we select a grid size of €0.25, our data corresponds to their “fine grid” data., see www.ec3hp.de for more information. unnecessary components of easychat’s user interface were hidden using zorro, see www.gabrieleponti.com/software., like ebert and wiesen (), we also observe positive and significant correlations between the risk premia as measured by the spearman rank correlation […]

PMCID: 5487354
PMID: 28655870
DOI: 10.1038/s41598-017-04442-w

[…] reaching distance, which depended on the participant’s arm length (52 to 57 cm from the participant to the bottom screen). an infrared position detection frame, the ‘ir-frame’ (tmdtouch imac zorro macsk 55 cm, 16:9, usb connected), was used for online measurement of the position of the index finger. the frame spanned a detection plane in front of the bottom screen and within […]


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Zorro institution(s)
Center for Cellular Imaging and NanoAnalytics, Biozentrum, Universität Basel, Basel, Switzerland
Zorro funding source(s)
This work was supported by the Swiss National Science Foundation, Grants 205320_144427 and 205320_166163.

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