zUMIs specifications
Information
| Unique identifier | OMICS_19106 |
|---|---|
| Name | zUMIs |
| Software type | Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A pair of files, whereas one file contains the cDNA sequences and the other one the read containing the BC and UMI. |
| Input format | FASTQ |
| Output data | Gene expression counts |
| Output format | RDS |
| Biological technology | Illumina |
| Operating system | Unix/Linux |
| Programming languages | Perl, R, Shell (Bash) |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Stable |
| Maintained | Yes |
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Versioning
No version available
Maintainers
- person_outline Swati Parekh
- person_outline Christoph Ziegenhain
Publication for zUMIs
2018 GigaScience
PMCID: 6007394
PMID: 29846586
DOI: 10.1093/gigascience/giy059
zUMIs institution(s)
Anthropology & Human Genomics, Department of Biology II, Ludwig-Maximilians University, Munich, Germany
zUMIs funding source(s)
Supported by the DFG through SFB1243 subprojects A14/A15.
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