De novo genome sequencing data analysis software tools

De novo genome sequencing data analysis software tools

De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis. Numerous draft genomes have already been constructed.

Data preprocessing

Data processing

Data analysis

Sequence alignment

Genome variant analysis

Protein sequence/Expression

Membrane protein

Annotation

Variant effect analysis

Phylogenomics

Population genetic analysis

Data visualization

Network analysis

Enrichment analysis

PCR/qPCR analysis

Workflows

File manipulation

Utilities

Unclassified tools