De novo genome sequencing data analysis bioinformatics software tools

De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis.…

De novo sequencing analysis steps

De novo sequencing analysis workflow

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De novo sequencing analysis workflow schema

De novo genome sequencing data analysis bioinformatics software tools

Most Recent Tools

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nQuire
Desktop

nQuire

Aims to distinguish the distribution of base frequencies at variable sites for…

Aims to distinguish the distribution of base frequencies at variable sites for diploids, triploids and tetraploids directly from read mappings to a reference genome. nQuire is a statistical approach…

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Velour
Desktop

Velour

Assembles short read de novo DNA sequence. Velour enables the single-end…

Assembles short read de novo DNA sequence. Velour enables the single-end assembly of gigabase-scale genomes on a single modern commodity workstation. It runs following two phases: the first one…

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Mapsembler
Desktop

Mapsembler

Processes large datasets of reads on commodity hardware. Mapsembler checks the…

Processes large datasets of reads on commodity hardware. Mapsembler checks the presence of a known piece of information with a bounded number of substitutions in a set of reads. It provides pieces of…

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Supernova
Desktop

Supernova

Allows to create true diploid de novo assemblies. Supernova can separate…

Allows to create true diploid de novo assemblies. Supernova can separate homologous chromosomes over long distances, in this sense capturing the true biology of a diploid genome. The Supernova…

Most Popular Tools

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Ray
Desktop

Ray

Assembles reads obtained with new sequencing technologies (Illumina, 454,…

Assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2. Ray allows to reduce the number of contigs and the number of errors. It can serve as a basis to develop…

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SSAKE
Desktop

SSAKE

Provides a de novo assembler for short DNA sequence reads. SSAKE is designed to…

Provides a de novo assembler for short DNA sequence reads. SSAKE is designed to help leverage the information from short sequences reads by assembling them into contigs and scaffolds that can be used…

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Orione
Web

Orione

A Galaxy-based framework consisting of publicly available research software and…

A Galaxy-based framework consisting of publicly available research software and specifically designed pipelines to build complex, reproducible workflows for next-generation sequencing microbiology…

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A5-miseq
Desktop

A5-miseq

Produces high quality microbial genome assemblies on a laptop computer without…

Produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error…

Curators for De novo sequencing analysis

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