De novo genome sequencing data analysis software tools

De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis. Numerous draft genomes have already been constructed (Li et al., 2010; Al-Dous et al., 2011; Jex et al., 2011; Murchison et al., 2012).

Data preprocessing

Data processing

Data analysis

Sequence alignment

Genome variant analysis

Protein sequence/Expression

Membrane protein


Variant effect analysis


Population genetic analysis

Data visualization

Network analysis

Enrichment analysis

PCR/qPCR analysis


File manipulation


Unclassified tools