De novo genome sequencing data analysis software tools

De novo genome sequencing data analysis software tools De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis. Numerous draft genomes have already been constructed.

Data preprocessing

Data processing

Sequence alignment

Genome variant analysis

Protein sequence/Expression

Membrane protein

Data analysis

Annotation

Variant effect analysis

Phylogenomics

Population genetic analysis

Data visualization

Network analysis

Enrichment analysis

PCR/qPCR analysis

Workflows

File manipulation

Utilities

Unclassified tools