De novo genome sequencing data analysis bioinformatics software tools

De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis.…

De novo sequencing analysis steps

De novo sequencing analysis workflow

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De novo sequencing analysis workflow schema

Most recent bioinformatics tools

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TAPDANCE
Desktop

TAPDANCE

Provides a fully automated rationally derived method for complete analysis of…

Provides a fully automated rationally derived method for complete analysis of significant Common Insertion Sites (CISs) using next generation sequencing. TAPDANCE furnishes a pipeline that performs…

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SeqMan NGen
Desktop

SeqMan NGen

Gathers any size genome. SeqMan NGen consists of sequence assembly software…

Gathers any size genome. SeqMan NGen consists of sequence assembly software that brings data from leading sequencing platforms. It supplies an interface that guides users through their editing and…

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Simplifier
Desktop

Simplifier

Enables to remove redundant Prokaryote sequences produced by genome assembly.…

Enables to remove redundant Prokaryote sequences produced by genome assembly. Simplifier is a stand-alone application that was developed to (i) eliminate redundant sequences from groups of contigs…

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BACCardI
Desktop

BACCardI

Generates virtual clone maps. BACCardI allows the projection of read pair…

Generates virtual clone maps. BACCardI allows the projection of read pair information as obtained from positioning of end sequences onto the genome assembly. It offers two different modes: (1) the…

Most popular analytical software

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SV-STAT
Desktop

SV-STAT Structural Variation detection by STAck and Tail

Quantifies evidence for structural variation in genomic regions suspected of…

Quantifies evidence for structural variation in genomic regions suspected of harboring rearrangements. SV-STAT extends existing methods by adjusting a chimeric read’s support of a structural…

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Ray
Desktop

Ray

Assembles reads obtained with new sequencing technologies (Illumina, 454,…

Assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2. Ray allows to reduce the number of contigs and the number of errors. It can serve as a basis to develop…

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SSAKE
Desktop

SSAKE

Provides a de novo assembler for short DNA sequence reads. SSAKE is designed to…

Provides a de novo assembler for short DNA sequence reads. SSAKE is designed to help leverage the information from short sequences reads by assembling them into contigs and scaffolds that can be used…

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SPAdes
Desktop

SPAdes

A single-cell assembler for capturing and sequencing “microbial dark…

A single-cell assembler for capturing and sequencing “microbial dark matter” that forms small pools of randomly selected single cells (called a mini-metagenome) and further sequences all genomes…

Curators for De novo sequencing analysis

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