De novo genome sequencing data analysis software tools

De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis. Numerous draft genomes have already been constructed (Li et al., 2010; Al-Dous et al., 2011; Jex et al., 2011; Murchison et al., 2012).

Data preprocessing

Data processing

Data analysis

Sequence alignment

Genome variant analysis

Annotation

Variant effect analysis

Phylogenomics

Population genetic analysis

Data visualization

Network analysis

Enrichment analysis

Workflows

File manipulation

Utilities

Unclassified tools